Try it in your browser, with nothing to install:

• Open the app, then open a volume (a public one, or in Chrome or Edge a folder on your machine) and pick models.
• Open an example, already running: an OpenOrganelle mouse-liver volume with the mitochondria model setup_53 on it.

🚧 Still under construction: expect frequent changes.

Features

• Almost any model. cellmap’s own networks, any model in the BioImage Model Zoo, Cellpose-SAM in 2D or 3D, fly_organelles checkpoints, DaCapo runs, ONNX exports, and any PyTorch or TensorFlow model through a short Python script. Paste what you have (a path, a zoo nickname, a Hugging Face repo, a Cellpose model name) into the dashboard’s Add a model, or run cellmap_flow add REF: it works out the model’s type, the environment it runs in and anything it still needs.
• Any volume. zarr (v2 or v3, OME-Zarr), N5 or Neuroglancer precomputed, on…